CVTree4: Composition Vector Tree Version 4
Description:
CVTree constructs whole-genome based phylogenetic trees without sequence
alignment by using a Composition Vector (CV) approach. It was first
developed to infer evolutionary relatedness of microbial organisms and
then successfully applied to viruses, chloroplasts, and fungi. CVTree3
makes comparison with taxonomy and reports tree-branch monophyleticity
from domain to species. Please read the
Online User's Manual
for details.
Reference:
Guanghong Zuo (2021) CVTree: A Parallel Alignment-free Phylogeny and Taxonomy Tool based on Composition Vectors of Genomes, Genomics Proteomics & Bioinformatics, doi:10.1016/j.gpb.2021.03.006
Guanghong Zuo, Bailin Hao (2015) CVTree3 web server for whole-genome-based and alignment-free prokaryotic phylogeny and taxonomy, Genomics Proteomics & Bioinformatics, 13: 321-331.
Ji Qi, Bin Wang, Bailin Hao (2004) Whole proteome prokaryote phylogeny without sequence alignment: a K-string composition approach, J Mol Evol, 58: 1 –11
for details.Reference:
Guanghong Zuo (2021) CVTree: A Parallel Alignment-free Phylogeny and Taxonomy Tool based on Composition Vectors of Genomes, Genomics Proteomics & Bioinformatics, doi:10.1016/j.gpb.2021.03.006
Guanghong Zuo, Bailin Hao (2015) CVTree3 web server for whole-genome-based and alignment-free prokaryotic phylogeny and taxonomy, Genomics Proteomics & Bioinformatics, 13: 321-331.
Ji Qi, Bin Wang, Bailin Hao (2004) Whole proteome prokaryote phylogeny without sequence alignment: a K-string composition approach, J Mol Evol, 58: 1 –11
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